PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J390000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 267aa    MW: 27923.2 Da    PI: 8.0328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J390000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS44.91.9e-14101167267
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalpps 67 
                        + lL+ecA avs g+l+ a+ +L +l ++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p 
  Pavir.J390000.1.p 101 IALLMECAVAVSVGNLADANGMLLELGQMASPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPP 167
                        689*******************************66779*********************9998654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.5E-12101167IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQFHDPYIYS GNAVVGANLP LSSSSHSFLP HHQEFVHTGD RCPGKDVPEF VDQAAAEVSG  60
EQELAVNKEV SGRGGDGAVE EHQNGAATAR GEEEAHGVRM IALLMECAVA VSVGNLADAN  120
GMLLELGQMA SPYASSCGER LVAYFTKAMA ARLMSSWVGI CAPLAPPCAA VHAALTSRHA  180
SDGGGSSDVE APEAWTPTED HRGRARVRGA QSCAPAATSR TRPPRFTEGP AQWRGGAGRR  240
RRRGGARCTC GGGGVRARRQ RQARPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269621e-126KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963689.14e-93PREDICTED: protein SCARECROW-like
TrEMBLK3Z5S25e-93K3Z5S2_SETIT; Uncharacterized protein
STRINGSi021890m1e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.18e-13GRAS family protein